HL_4V7Y_062

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGGAUGACCC

Length

11 nucleotides

Bulged bases

4V7Y|1|BA|A|1174, 4V7Y|1|BA|U|1175, 4V7Y|1|BA|G|1176, 4V7Y|1|BA|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7Y_062 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3709

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V7Y|1|BA|G|1169
4V7Y|1|BA|G|1170
4V7Y|1|BA|G|1171
4V7Y|1|BA|G|1173
4V7Y|1|BA|A|1174
4V7Y|1|BA|U|1175
4V7Y|1|BA|G|1176
4V7Y|1|BA|A|1177
4V7Y|1|BA|C|1178
4V7Y|1|BA|C|1179
4V7Y|1|BA|C|1180

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L21