HL_4V7Y_108

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4V7Y|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7Y_108 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1064

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V7Y|1|CA|G|259
4V7Y|1|CA|G|260
4V7Y|1|CA|U|261
4V7Y|1|CA|A|262
4V7Y|1|CA|A|263
4V7Y|1|CA|U|264
4V7Y|1|CA|G|265
4V7Y|1|CA|G|266
4V7Y|1|CA|C|267

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain CT

30S ribosomal protein S20