HL_4V7Y_222

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGCGAAAGCGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7Y_222 not in the Motif Atlas

Geometric match to HL_5J7L_216

Geometric discrepancy: 0.3952

The information below is about HL_5J7L_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78284.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V7Y|1|CA|C|1162
4V7Y|1|CA|C|1163
4V7Y|1|CA|G|1164
4V7Y|1|CA|C|1165
4V7Y|1|CA|G|1166
4V7Y|1|CA|A|1168
4V7Y|1|CA|A|1169
4V7Y|1|CA|A|1170
4V7Y|1|CA|G|1171
4V7Y|1|CA|C|1172
4V7Y|1|CA|G|1173
4V7Y|1|CA|G|1174

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CG

30S ribosomal protein S7