Motif HL_78284.1 Version HL_78284.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_216 | 5J7L | 0.0000 | 0 | AA | SSU rRNA | U | 1009 | U | 1010 | C | 1011 | A | 1012 | G | 1013 | A | 1014 | G | 1015 | A | 1016 | U | 1017 | G | 1018 | A | 1019 | G | 1020 | ncWW | ncWW | ncWW | |
| 2 | HL_1EC6_002 | 1EC6 | 0.9978 | 2 | D | 20-MER RNA HAIRPIN | G | 4 | A | 5 | C | 6 | C | 7 | U | 8 | A | 9 | G | 10 | U | 12 | C | 13 | C | 15 | C | 16 | C | 17 | cWW | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGAGAUGAG | 1 |
| GACCUAGAUCACCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGAGAUGA | 1 |
| ACCUAGAUCACC | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 1.00 | Avg 0.50 | Max 1.00
Coloring options: