HL_4V80_139

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4V80|1|DA|U|139, 4V80|1|DA|G|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_139 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3413

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V80|1|DA|U|137
4V80|1|DA|U|138
4V80|1|DA|U|139
4V80|1|DA|C|140
4V80|1|DA|G|141
4V80|1|DA|A|142

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23