HL_4V80_144

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_144 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.1621

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4V80|1|DA|C|305
4V80|1|DA|U|306
4V80|1|DA|G|307
4V80|1|DA|G|308
4V80|1|DA|A|309
4V80|1|DA|A|310
4V80|1|DA|A|311
4V80|1|DA|G|312

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L24