HL_4V80_155

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

4V80|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_155 not in the Motif Atlas

Geometric match to HL_4WF9_021

Geometric discrepancy: 0.3888

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4V80|1|DA|U|641
4V80|1|DA|U|642
4V80|1|DA|A|643
4V80|1|DA|A|644
4V80|1|DA|C|645
4V80|1|DA|U|646
4V80|1|DA|G|647

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L33

Chain D3

50S ribosomal protein L35