HL_4V80_175

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGACACAGG

Length

10 nucleotides

Bulged bases

4V80|1|DA|A|1614, 4V80|1|DA|A|1616, 4V80|1|DA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_175 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.3446

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V80|1|DA|C|1611
4V80|1|DA|C|1612
4V80|1|DA|G|1613
4V80|1|DA|A|1614
4V80|1|DA|C|1615
4V80|1|DA|A|1616
4V80|1|DA|C|1617
4V80|1|DA|A|1618
4V80|1|DA|G|1619
4V80|1|DA|G|1620

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DS

50S ribosomal protein L22