HL_4V83_006

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

4V83|1|AA|U|208, 4V83|1|AA|U|209, 4V83|1|AA|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_006 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3525

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V83|1|AA|C|201
4V83|1|AA|U|208
4V83|1|AA|U|209
4V83|1|AA|U|210
4V83|1|AA|G|216

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains