HL_4V83_017

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_017 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.1143

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V83|1|AA|C|726
4V83|1|AA|G|727
4V83|1|AA|A|728
4V83|1|AA|A|729
4V83|1|AA|G|730
4V83|1|AA|G|731

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AO

30S ribosomal protein S15

Chain AR

30S ribosomal protein S18