HL_4V83_075

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAGAGC

Length

7 nucleotides

Bulged bases

4V83|1|BA|A|1634

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_075 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1661

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V83|1|BA|G|1630
4V83|1|BA|A|1631
4V83|1|BA|A|1632
4V83|1|BA|G|1633
4V83|1|BA|A|1634
4V83|1|BA|G|1635
4V83|1|BA|C|1636

Current chains

Chain BA

23S ribosomal RNA

Nearby chains