HL_4V83_088

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V83|1|BA|A|2268, 4V83|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_088 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0674

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V83|1|BA|C|2264
4V83|1|BA|U|2265
4V83|1|BA|A|2266
4V83|1|BA|A|2267
4V83|1|BA|A|2268
4V83|1|BA|A|2269
4V83|1|BA|G|2270
4V83|1|BA|G|2271
4V83|1|BA|U|2272
4V83|1|BA|A|2273
4V83|1|BA|A|2274
4V83|1|BA|C|2275
4V83|1|BA|G|2276

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27