HL_4V83_112
3D structure
- PDB id
- 4V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 4V83|1|CA|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V83_112 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.1031
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4V83|1|CA|G|259
4V83|1|CA|G|260
4V83|1|CA|U|261
4V83|1|CA|A|262
4V83|1|CA|A|263
4V83|1|CA|U|264
4V83|1|CA|G|265
4V83|1|CA|G|266
4V83|1|CA|C|267
Current chains
- Chain CA
- ribosomal RNA 16S
Nearby chains
- Chain CQ
- 30S ribosomal protein S17
- Chain CT
- 30S ribosomal protein S20
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