HL_4V83_120

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_120 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0979

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V83|1|CA|G|617
4V83|1|CA|C|618
4V83|1|CA|U|619
4V83|1|CA|C|620
4V83|1|CA|A|621
4V83|1|CA|A|622
4V83|1|CA|C|623

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CP

30S ribosomal protein S16