3D structure

PDB id
4V84 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UUGGGAAG
Length
8 nucleotides
Bulged bases
4V84|1|BA|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V84_044 not in the Motif Atlas
Homologous match to HL_7RQB_010
Geometric discrepancy: 0.1131
The information below is about HL_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

4V84|1|BA|U|305
4V84|1|BA|U|306
4V84|1|BA|G|307
4V84|1|BA|G|308
4V84|1|BA|G|309
4V84|1|BA|A|310
4V84|1|BA|A|311
4V84|1|BA|G|312

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BU
50S ribosomal protein L24

Coloring options:


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