HL_4V84_079

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4V84|1|BA|A|1780, 4V84|1|BA|C|1781, 4V84|1|BA|C|1782, 4V84|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_079 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0765

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V84|1|BA|U|1777
4V84|1|BA|U|1778
4V84|1|BA|U|1779
4V84|1|BA|A|1780
4V84|1|BA|C|1781
4V84|1|BA|C|1782
4V84|1|BA|A|1783
4V84|1|BA|A|1784
4V84|1|BA|A|1785
4V84|1|BA|A|1786
4V84|1|BA|A|1787

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2