HL_4V84_082

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V84|1|BA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_082 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1239

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V84|1|BA|G|1910
4V84|1|BA|U|1911
4V84|1|BA|A|1912
4V84|1|BA|A|1913
4V84|1|BA|C|1914
4V84|1|BA|U|1915
4V84|1|BA|A|1916
4V84|1|BA|U|1917
4V84|1|BA|A|1918
4V84|1|BA|A|1919
4V84|1|BA|C|1920

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA