HL_4V84_086

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V84|1|BA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_086 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1036

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V84|1|BA|C|2248
4V84|1|BA|U|2249
4V84|1|BA|G|2250
4V84|1|BA|G|2251
4V84|1|BA|G|2252
4V84|1|BA|G|2253
4V84|1|BA|C|2254
4V84|1|BA|G|2255
4V84|1|BA|G|2256

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27