HL_4V84_087

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V84|1|BA|A|2268, 4V84|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_087 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0711

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V84|1|BA|C|2264
4V84|1|BA|U|2265
4V84|1|BA|A|2266
4V84|1|BA|A|2267
4V84|1|BA|A|2268
4V84|1|BA|A|2269
4V84|1|BA|G|2270
4V84|1|BA|G|2271
4V84|1|BA|U|2272
4V84|1|BA|A|2273
4V84|1|BA|A|2274
4V84|1|BA|C|2275
4V84|1|BA|G|2276

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27