HL_4V84_124

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_124 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.1395

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V84|1|CA|C|862
4V84|1|CA|U|863
4V84|1|CA|A|864
4V84|1|CA|A|865
4V84|1|CA|C|866
4V84|1|CA|G|867

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CE

30S ribosomal protein S5

Chain CH

30S ribosomal protein S8