HL_4V84_145

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

4V84|1|DA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_145 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.2272

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V84|1|DA|A|225
4V84|1|DA|G|226
4V84|1|DA|A|227
4V84|1|DA|A|228
4V84|1|DA|A|229
4V84|1|DA|U|230

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DL

50S ribosomal protein L15