HL_4V84_155

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_155 not in the Motif Atlas

Geometric match to HL_1G1X_005

Geometric discrepancy: 0.1836

The information below is about HL_1G1X_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V84|1|DA|C|544
4V84|1|DA|G|545
4V84|1|DA|C|546
4V84|1|DA|A|547
4V84|1|DA|A|548
4V84|1|DA|G|549

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DR

50S ribosomal protein L21