HL_4V84_159

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V84|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_159 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.316

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V84|1|DA|C|641
4V84|1|DA|G|642
4V84|1|DA|A|643
4V84|1|DA|A|644
4V84|1|DA|C|645
4V84|1|DA|A|646
4V84|1|DA|G|647

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L33

Chain D5

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15