HL_4V84_170

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_170 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.102

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V84|1|DA|G|1281
4V84|1|DA|U|1282
4V84|1|DA|G|1283
4V84|1|DA|A|1284
4V84|1|DA|G|1285
4V84|1|DA|A|1286
4V84|1|DA|A|1287
4V84|1|DA|U|1288
4V84|1|DA|C|1289

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DN

50S ribosomal protein L17

Chain DS

50S ribosomal protein L22