HL_4V84_214

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_214 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3029

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V84|1|AA|G|1164
4V84|1|AA|C|1165
4V84|1|AA|G|1166
4V84|1|AA|A|1167
4V84|1|AA|A|1169
4V84|1|AA|A|1170
4V84|1|AA|G|1171
4V84|1|AA|C|1172

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AG

30S ribosomal protein S7