HL_4V84_215

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_215 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.2729

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V84|1|AA|C|1264
4V84|1|AA|G|1265
4V84|1|AA|G|1266
4V84|1|AA|C|1267
4V84|1|AA|A|1268
4V84|1|AA|A|1269
4V84|1|AA|C|1270
4V84|1|AA|G|1271

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19

Chain AU

30S ribosomal protein Thx