HL_4V84_239
3D structure
- PDB id
- 4V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 4V84|1|BB|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V84_239 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.1406
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V84|1|BB|U|34
4V84|1|BB|U|35
4V84|1|BB|C|36
4V84|1|BB|C|37
4V84|1|BB|C|38
4V84|1|BB|A|39
4V84|1|BB|U|40
4V84|1|BB|U|41
4V84|1|BB|C|42
4V84|1|BB|C|43
4V84|1|BB|G|44
4V84|1|BB|A|45
4V84|1|BB|A|46
4V84|1|BB|C|47
4V84|1|BB|A|48
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L5
- Chain BO
- 50S ribosomal protein L18
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