HL_4V85_068

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

4V85|1|BA|A|1453, 4V85|1|BA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V85_068 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2286

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V85|1|BA|C|1451
4V85|1|BA|G|1452
4V85|1|BA|A|1453
4V85|1|BA|C|1454
4V85|1|BA|G|1455
4V85|1|BA|G|1456
4V85|1|BA|U|1457
4V85|1|BA|U|1458
4V85|1|BA|G|1459

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L17