HL_4V85_077

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

4V85|1|BA|A|1780, 4V85|1|BA|U|1781, 4V85|1|BA|U|1782, 4V85|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V85_077 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0886

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V85|1|BA|U|1777
4V85|1|BA|U|1778
4V85|1|BA|U|1779
4V85|1|BA|A|1780
4V85|1|BA|U|1781
4V85|1|BA|U|1782
4V85|1|BA|A|1783
4V85|1|BA|A|1784
4V85|1|BA|A|1785
4V85|1|BA|A|1786
4V85|1|BA|A|1787

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2