HL_4V85_080

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V85|1|BA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V85_080 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1567

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V85|1|BA|G|1910
4V85|1|BA|U|1911
4V85|1|BA|A|1912
4V85|1|BA|A|1913
4V85|1|BA|C|1914
4V85|1|BA|U|1915
4V85|1|BA|A|1916
4V85|1|BA|U|1917
4V85|1|BA|A|1918
4V85|1|BA|A|1919
4V85|1|BA|C|1920

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

16S rRNA

Chain AV

messenger RNA

Chain AY

Viomycin