HL_4V85_098

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V85|1|BA|G|2751, 4V85|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V85_098 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0743

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V85|1|BA|C|2745
4V85|1|BA|U|2746
4V85|1|BA|G|2747
4V85|1|BA|A|2748
4V85|1|BA|A|2749
4V85|1|BA|A|2750
4V85|1|BA|G|2751
4V85|1|BA|C|2752
4V85|1|BA|A|2753
4V85|1|BA|U|2754
4V85|1|BA|C|2755
4V85|1|BA|U|2756
4V85|1|BA|A|2757
4V85|1|BA|A|2758
4V85|1|BA|G|2759

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S ribosomal protein L36 1

Chain BG

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13