HL_4V87_032

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_032 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.318

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

4V87|1|AA|G|1171
4V87|1|AA|G|1173
4V87|1|AA|A|1174
4V87|1|AA|U|1175
4V87|1|AA|G|1176
4V87|1|AA|A|1177
4V87|1|AA|C|1178

Current chains

Chain AA

RNA (2909-MER)

Nearby chains