HL_4V87_057

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_057 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2128

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V87|1|AA|G|2303
4V87|1|AA|G|2304
4V87|1|AA|A|2305
4V87|1|AA|C|2306
4V87|1|AA|G|2307
4V87|1|AA|G|2308
4V87|1|AA|A|2309
4V87|1|AA|A|2310
4V87|1|AA|A|2311
4V87|1|AA|U|2312
4V87|1|AA|C|2313

Current chains

Chain AA

RNA (2909-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

50S ribosomal protein L5