HL_4V87_113

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAGCCCGGUAGC

Length

13 nucleotides

Bulged bases

4V87|1|BD|C|16, 4V87|1|BD|C|17, 4V87|1|BD|C|18, 4V87|1|BD|G|19, 4V87|1|BD|G|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_113 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3043

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

4V87|1|BD|G|12
4V87|1|BD|C|13
4V87|1|BD|A|14
4V87|1|BD|G|15
4V87|1|BD|C|16
4V87|1|BD|C|17
4V87|1|BD|C|18
4V87|1|BD|G|19
4V87|1|BD|G|20
4V87|1|BD|U|21
4V87|1|BD|A|22
4V87|1|BD|G|23
4V87|1|BD|C|24

Current chains

Chain BD

TRNA-FMET

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BN

30S RIBOSOMAL PROTEIN S11