HL_4V87_130

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_130 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.1564

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V87|1|CA|C|689
4V87|1|CA|G|690
4V87|1|CA|G|691
4V87|1|CA|U|692
4V87|1|CA|G|693
4V87|1|CA|A|694
4V87|1|CA|A|695
4V87|1|CA|A|696
4V87|1|CA|U|697
4V87|1|CA|G|698

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain C1

MRNA

Chain CD

Transfer RNA; tRNA

Chain CJ

30S RIBOSOMAL PROTEIN S7

Chain CN

30S RIBOSOMAL PROTEIN S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA