HL_4V87_166

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V87|1|DA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_166 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0689

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V87|1|DA|U|305
4V87|1|DA|U|306
4V87|1|DA|G|307
4V87|1|DA|G|308
4V87|1|DA|G|309
4V87|1|DA|A|310
4V87|1|DA|A|311
4V87|1|DA|G|312

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain DU

50S ribosomal protein L24