HL_4V87_179

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_179 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.0617

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V87|1|DA|G|712
4V87|1|DA|G|713
4V87|1|DA|U|714
4V87|1|DA|G|715
4V87|1|DA|A|716
4V87|1|DA|G|717
4V87|1|DA|A|718
4V87|1|DA|C|719

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CR

30S RIBOSOMAL PROTEIN S15

Chain CT

30S RIBOSOMAL PROTEIN S17