HL_4V87_238

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCAAUAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_238 not in the Motif Atlas

Geometric match to HL_4WSM_251

Geometric discrepancy: 0.3108

The information below is about HL_4WSM_251

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V87|1|BB|C|47
4V87|1|BB|C|48
4V87|1|BB|C|49
4V87|1|BB|A|50
4V87|1|BB|A|51
4V87|1|BB|U|52
4V87|1|BB|A|53
4V87|1|BB|G|54
4V87|1|BB|G|55
4V87|1|BB|G|56

Current chains

Chain BB

TRNA-LEU

Nearby chains