Motif HL_50525.1 Version HL_50525.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 3-9 | 4-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DME_003 | 6DME | 0.4995 | 1 | A | ppGpp Riboswitch | G | 78 | G | 79 | A | 80 | U | 81 | A | 82 | A | 83 | A | 84 | A | 85 | A | 87 | C | 88 | cWW | cWW | tWH | tWH | |
| 2 | HL_8GLP_091 | 8GLP | 0.0000 | 1 | S2 | SSU rRNA | G | 377 | U | 378 | C | 379 | G | 380 | C | 381 | C | 382 | G | 383 | U | 384 | C | 386 | C | 387 | cWW | cWW | |||
| 3 | HL_4WSM_251 | 4WSM | 0.6574 | 0 | 1K | tRNA | C | 47 | C | 48 | C | 49 | A | 50 | A | 51 | U | 52 | A | 53 | G | 54 | G | 55 | G | 56 | ncWW | ncWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAAAAGAC | 1 |
| GUCGCCGUGCC | 1 |
| CCCAAUAGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAAAAGA | 1 |
| UCGCCGUGC | 1 |
| CCAAUAGG | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.50 | Avg 0.42 | Max 0.74
Coloring options: