HL_4V87_256

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

4V87|1|DA|G|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_256 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.5089

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V87|1|DA|G|2304
4V87|1|DA|A|2305
4V87|1|DA|C|2306
4V87|1|DA|G|2307
4V87|1|DA|G|2308
4V87|1|DA|A|2309
4V87|1|DA|A|2310
4V87|1|DA|A|2311
4V87|1|DA|U|2312

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain DG

50S ribosomal protein L5