HL_4V88_001

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

4V88|1|A1|A|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_001 not in the Motif Atlas

Homologous match to HL_5TBW_001

Geometric discrepancy: 0.07

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V88|1|A1|U|38
4V88|1|A1|A|39
4V88|1|A1|A|40
4V88|1|A1|G|41
4V88|1|A1|C|42
4V88|1|A1|A|43
4V88|1|A1|U|44
4V88|1|A1|A|45

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BL

60S ribosomal protein L13-A

Chain BN

60S ribosomal protein L15-A

Chain Ba

60S ribosomal protein L28

Chain Bo

60S ribosomal protein L42-A