HL_4V88_012

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

4V88|1|A1|U|545, 4V88|1|A1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_012 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.2627

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

4V88|1|A1|C|543
4V88|1|A1|C|544
4V88|1|A1|U|545
4V88|1|A1|C|546
4V88|1|A1|G|547
4V88|1|A1|G|548

Current chains

Chain A1

25S rRNA

Nearby chains