HL_4V88_031

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_031 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.0418

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V88|1|A1|A|1462
4V88|1|A1|U|1463
4V88|1|A1|G|1464
4V88|1|A1|A|1465
4V88|1|A1|G|1466
4V88|1|A1|A|1467
4V88|1|A1|A|1468
4V88|1|A1|C|1469
4V88|1|A1|U|1470

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BP

60S ribosomal protein L17-A

Chain BR

60S ribosomal protein L19-A

Chain Bd

60S ribosomal protein L31-A