HL_4V88_037

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

4V88|1|A1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_037 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.0529

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V88|1|A1|G|1680
4V88|1|A1|U|1681
4V88|1|A1|U|1682
4V88|1|A1|A|1683
4V88|1|A1|U|1684
4V88|1|A1|C|1685
4V88|1|A1|U|1686
4V88|1|A1|U|1687
4V88|1|A1|U|1688

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19-A

Chain BU

60S ribosomal protein L22-A