HL_4V88_042

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

4V88|1|A1|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_042 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0342

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V88|1|A1|U|1862
4V88|1|A1|G|1863
4V88|1|A1|A|1864
4V88|1|A1|A|1865
4V88|1|A1|C|1866
4V88|1|A1|A|1867
4V88|1|A1|G|1868

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19-A