HL_4V88_045

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

4V88|1|A1|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_045 not in the Motif Atlas

Homologous match to HL_5TBW_045

Geometric discrepancy: 0.0754

The information below is about HL_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.2

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V88|1|A1|G|2110
4V88|1|A1|G|2111
4V88|1|A1|U|2112
4V88|1|A1|A|2113
4V88|1|A1|C|2114

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BR

60S ribosomal protein L19-A

Chain BW

60S ribosomal protein L24-A