HL_4V88_050

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

4V88|1|A1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_050 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0415

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V88|1|A1|U|2292
4V88|1|A1|C|2293
4V88|1|A1|U|2294
4V88|1|A1|A|2295
4V88|1|A1|A|2296
4V88|1|A1|U|2297
4V88|1|A1|U|2298
4V88|1|A1|A|2299
4V88|1|A1|G|2300

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BV

60S ribosomal protein L23-A