Motif HL_27115.2 Version HL_27115.2 of this group appears in releases 3.90 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7	3-6
1	HL_4V88_213	4V88	0.5887	2	Anticodon loop related	A6	SSU rRNA	A	1238	U	1239	U	1240	G	1241	A	1242	A	1244	C	1246	U	1247	cWW	ntSW
2	HL_8C3A_218	8C3A	0.3442	2	Anticodon loop related	CM	SSU rRNA	A	1223	U	1224	U	1225	G	1226	A	1227	A	1229	C	1231	U	1232	cWW		ntsS
3	HL_5J7L_012	5J7L	0.3288	1	GNRA related	AA	SSU rRNA	G	462	U	463	U	464	A	465	A	466	A	468	C	469	C	470	cWW
4	HL_4V9F_043	4V9F	0.3263	1	GNRA wlth tandem sheared	0	LSU rRNA	C	1705	G	1706	G	1707	C	1708	G	1709	A	1711	A	1712	G	1713	cWW	tSH	ntSH
5	HL_8VTW_021	8VTW	0.1626	0	GNRA wlth tandem sheared	1A	LSU rRNA	G	712	G	713	U	714	G	715	A	716	G	717	A	718	C	719	cWW	ntSH
6	HL_3HHN_010	3HHN	0.0000	0	GNRA wlth tandem sheared	E	Class I ligase ribozyme, self-ligation product	G	92	U	93	U	94	A	95	A	96	A	97	A	98	C	99	cWW	ntSH
7	HL_5J7L_154	5J7L	0.2474	0	GNRA wlth tandem sheared	DA	LSU rRNA	G	712	G	713	U	714	A	715	A	716	C	717	A	718	C	719	cWW	tSH
8	HL_1MMS_002	1MMS	0.3495	0	GNRA wlth tandem sheared	C	23S RIBOSOMAL RNA	C	1092	G	1093	U	1094	A	1095	A	1096	C	1097	A	1098	G	1099	cWW	tSH	ntSHa
9	HL_6PRV_002	6PRV	0.3663	0	GNRA wlth tandem sheared	A	LSU rRNA	C	1092	G	1093	U	1094	A	1095	A	1096	U	1097	A	1098	G	1099	cWW	tSH
10	HL_5D8H_002	5D8H	0.3455	0	GNRA wlth tandem sheared	A	LSU rRNA	C	1202	G	1203	U	1204	A	1205	A	1206	C	1207	A	1208	G	1209	cWW	tSH
11	HL_8C3A_028	8C3A	0.3026	0	GNRA wlth tandem sheared	1	LSU rRNA	U	1263	G	1264	U	1265	A	1266	A	1267	C	1268	A	1269	A	1270	cWW	tSH
12	HL_4WF9_004	4WF9	0.4022	0	GNRA wlth tandem sheared	X	LSU rRNA	A	136	G	137	U	138	U	139	A	140	U	141	G	142	U	143	cWW
13	HL_5AOX_001	5AOX	0.2795	0	GNRA wlth tandem sheared	C	ALU JO CONSENSUS RNA	G	11	G	12	U	13	G	14	G	15	C	16	U	17	C	18	cWW	ntSH
14	HL_1E8O_001	1E8O	0.3119	0	GNRA wlth tandem sheared	E	7SL RNA	G	110	G	111	U	112	G	113	G	114	C	115	G	116	C	117	cWW	ntSH	ntSHa
15	HL_4KQY_003	4KQY	0.3761	1	GNRA wlth tandem sheared	A	SAM-I riboswitch	C	94	U	95	C	96	G	97	A	98	A	99	C	100	G	102	cWW
16	HL_5TBW_050	5TBW	0.5792	1		1	LSU rRNA	U	2292	C	2293	U	2294	A	2295	A	2296	U	2297	A	2299	G	2300	cWW
17	HL_8C3A_050	8C3A	0.5684	1		1	LSU rRNA	U	2270	C	2271	U	2272	A	2273	A	2274	U	2275	A	2277	G	2278	cWW	ncWW
18	HL_7A0S_048	7A0S	0.6062	1		X	LSU rRNA	G	1932	G	1933	U	1934	A	1935	A	1936	G	1937	U	1939	C	1940	cWW	ncWB
19	HL_8VTW_048	8VTW	0.6372	1		1A	LSU rRNA	G	1949	G	1950	U	1951	A	1952	A	1953	G	1954	U	1956	C	1957	cWW	ncWB
20	HL_5J7L_182	5J7L	0.6634	1		DA	LSU rRNA	G	1949	G	1950	U	1951	A	1952	A	1953	G	1954	U	1956	C	1957	cWW	ncWB
21	HL_4WF9_046	4WF9	0.6450	1		X	LSU rRNA	G	1976	G	1977	U	1978	A	1979	A	1980	G	1981	U	1983	C	1984	cWW	ncWB
22	HL_4V9F_051	4V9F	0.6056	1		0	LSU rRNA	C	1990	A	1991	U	1992	C	1993	A	1994	G	1995	A	1997	G	1998	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUAAGUUC	4
AUUGAGAGCU	2
CGUAACAG	2
UCUAAUUAG	2
GUUAAUACC	1
CGGCGAAAG	1
GGUGAGAC	1
GUUAAAAC	1
GGUAACAC	1
CGUAAUAG	1
UGUAACAA	1
AGUUAUGU	1
GGUGGCUC	1
GGUGGCGC	1
CUCGAACAG	1
CAUCAGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAACA	4
GUAAGUU	4
UUGAGAGC	2
CUAAUUA	2
UUAAUAC	1
GGCGAAA	1
GUGAGA	1
UUAAAA	1
GUAAUA	1
GUUAUG	1
GUGGCU	1
GUGGCG	1
UCGAACA	1
AUCAGUA	1

Release history

Release	3.90
Date	2024-11-06
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA wlth tandem sheared (12)
(7)
Anticodon loop related (2)
GNRA related (1)
Basepair signature: cWW-F-F-F-F-F-F
Heat map statistics: Min 0.07 | Avg 0.50 | Max 0.98

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Coloring options: Nucleotide numbers

Motif HL_27115.2 Version HL_27115.2 of this group appears in releases 3.90 to 3.90 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_27115.2 Version HL_27115.2 of this group appears in releases 3.90 to 3.90

Download

Csv

Json