HL_4V88_051
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 4V88|1|A1|A|2372, 4V88|1|A1|A|2373, 4V88|1|A1|C|2374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V88_051 not in the Motif Atlas
- Homologous match to HL_5TBW_051
- Geometric discrepancy: 0.0517
- The information below is about HL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A1|G|2369
4V88|1|A1|G|2370
4V88|1|A1|G|2371
4V88|1|A1|A|2372
4V88|1|A1|A|2373
4V88|1|A1|C|2374
4V88|1|A1|G|2375
4V88|1|A1|G|2376
4V88|1|A1|G|2377
4V88|1|A1|C|2378
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein L3
- Chain Be
- 60S ribosomal protein L32
Coloring options: