HL_4V88_052

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGACAUAGUUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_052 not in the Motif Atlas

Homologous match to HL_5TBW_052

Geometric discrepancy: 0.1313

The information below is about HL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59851.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V88|1|A1|A|2441
4V88|1|A1|G|2442
4V88|1|A1|A|2443
4V88|1|A1|C|2444
4V88|1|A1|A|2445
4V88|1|A1|U|2501
4V88|1|A1|A|2502
4V88|1|A1|G|2503
4V88|1|A1|U|2504
4V88|1|A1|U|2505
4V88|1|A1|U|2506

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BG

60S ribosomal protein L8-A

Chain Bi

60S ribosomal protein L36-A